Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
THYM | rs1718160 | chr12:121611350 | T/C | 1.87E-5 | 118 | 46.6 | 46.27 | 24.87 | KM Plot |
THYM | rs17212608 | chr3:122493677 | T/C | 3.06E-7 | 119 | 42.73 | 38.83 | 28.43 | KM Plot |
THYM | rs17221736 | chr10:1542204 | G/A | 0.000185 | 117 | 39.5 | 42.82 | 25.83 | KM Plot |
THYM | rs1723156 | chr2:30675826 | A/G | 3.24E-7 | 119 | 38.58 | 46.23 | 13.23 | KM Plot |
THYM | rs1723167 | chr2:30714648 | T/C | 3.13E-7 | 119 | 38.83 | 45.87 | 13.23 | KM Plot |
THYM | rs1723168 | chr2:30674485 | G/A | 1.05E-13 | 116 | 38.58 | 46.23 | 12.93 | KM Plot |
THYM | rs1723170 | chr2:30673147 | G/A | 5.86E-14 | 118 | 38.58 | 46.23 | 12.93 | KM Plot |
THYM | rs1723175 | chr2:30667700 | C/T | 1.07E-6 | 115 | 36.73 | 46.23 | 13.23 | KM Plot |
THYM | rs1728553 | chr7:29694890 | C/G | 4.29E-13 | 119 | 38.13 | 46.27 | 6 | KM Plot |
THYM | rs17293852 | chr10:1544231 | A/T | 0.00015 | 119 | 25.83 | 42.9 | 40.67 | KM Plot |
THYM | rs17299246 | chr4:154743504 | C/T | 0.000138 | 119 | 42.25 | 32.7 | 39.45 | KM Plot |
THYM | rs1732117 | chr4:1217906 | A/G | 6.51E-5 | 118 | 11.73 | 38.83 | 42.73 | KM Plot |
THYM | rs1732127 | chr4:1203160 | G/A | 7.67E-5 | 116 | 11.73 | 38.83 | 42.73 | KM Plot |
THYM | rs17365299 | chr2:10943662 | A/G | 0.000197 | 119 | 41.77 | 38.58 | 62.72 | KM Plot |
THYM | rs17498203 | chr19:29279734 | G/T | 5.96E-5 | 114 | 50.08 | 38.23 | 18.07 | KM Plot |