Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs1718160 chr12:121611350 T/C 1.87E-5 118 46.6 46.27 24.87 KM Plot
THYM rs17212608 chr3:122493677 T/C 3.06E-7 119 42.73 38.83 28.43 KM Plot
THYM rs17221736 chr10:1542204 G/A 0.000185 117 39.5 42.82 25.83 KM Plot
THYM rs1723156 chr2:30675826 A/G 3.24E-7 119 38.58 46.23 13.23 KM Plot
THYM rs1723167 chr2:30714648 T/C 3.13E-7 119 38.83 45.87 13.23 KM Plot
THYM rs1723168 chr2:30674485 G/A 1.05E-13 116 38.58 46.23 12.93 KM Plot
THYM rs1723170 chr2:30673147 G/A 5.86E-14 118 38.58 46.23 12.93 KM Plot
THYM rs1723175 chr2:30667700 C/T 1.07E-6 115 36.73 46.23 13.23 KM Plot
THYM rs1728553 chr7:29694890 C/G 4.29E-13 119 38.13 46.27 6 KM Plot
THYM rs17293852 chr10:1544231 A/T 0.00015 119 25.83 42.9 40.67 KM Plot
THYM rs17299246 chr4:154743504 C/T 0.000138 119 42.25 32.7 39.45 KM Plot
THYM rs1732117 chr4:1217906 A/G 6.51E-5 118 11.73 38.83 42.73 KM Plot
THYM rs1732127 chr4:1203160 G/A 7.67E-5 116 11.73 38.83 42.73 KM Plot
THYM rs17365299 chr2:10943662 A/G 0.000197 119 41.77 38.58 62.72 KM Plot
THYM rs17498203 chr19:29279734 G/T 5.96E-5 114 50.08 38.23 18.07 KM Plot